Bruce Fowler

With Frank Zappa/The Mothers of Invention

• Over-Nite Sensation – 1973
• Apostrophe (') – 1974
• Roxy & Elsewhere – 1974
• Bongo Fury – 1975 (Captain Beefheart appears on this album as well)
• Zoot Allures – 1976
• Studio Tan – 1978
• Sleep Dirt – 1979
• Orchestral Favorites – 1979
• You Can't Do That on Stage Anymore, Vol. 1 – 1988
• Broadway the Hard Way – 1989
• The Best Band You Never Heard in Your Life – 1991
• You Can't Do That on Stage Anymore, Vol. 4 – 1991
• Make a Jazz Noise Here – 1991
• Beat the Boots – 1992
• Unmitigated Audacity (rec. 1974)
• Piquantique (rec. 1973)
• You Can't Do That on Stage Anymore, Vol. 6 – 1992
• Strictly Commercial – 1995
• The Lost Episodes – 1996
• Läther – 1996
• Have I Offended Someone? – 1997
• Cheap Thrills – 1998
• Son of Cheap Thrills – 1999
• Imaginary Diseases – 2006
• Trance-Fusion – 2006
• Wazoo – 2007
• One Shot Deal – 2008
• Road Tapes, Venue #2 – 2013
• Roxy By Proxy – 2014
• Roxy the Soundtrack – 2015
• The Crux of the Biscuit – 2016
• The Roxy Performances – 2018
• Halloween 73 – 2019
• Zappa - Original Motion Picture Soundtrack – 2020
• Zappa '88: The Last US Show – 2021

With Air Pocket/The Fowler Brothers

• 1976: Fly On (East Wind)
• 1985: Hunter
• 1988: Breakfast for Dinosaurs

With Captain Beefheart

• Shiny Beast (Bat Chain Puller) – 1978
• Doc at the Radar Station – 1980
• I'm Going to Do What I Wanna Do: Live at My Father's Place 1978 – 2000

With The Toshiko Akiyoshi - Lew Tabackin Big Band

• Farewell – 1980
• From Toshiko With Love also released as Tanuki's Night Out – 1981
• European Memoirs – 1982

Solo works

• Ants Can Count – 1990
• Entropy – 1993
• Synthetic Division (with Phil Teele) – 1994
• The Good Shepherd Soundtrack (with Marcelo Zarvos – 2006
• Inception – 2010

With Oingo Boingo

With other artists

• Stan Ridgway, The Big Heat – 1986
• Ed Mann, Perfect World – 1990
• Ray Charles, Genius Loves Company - 2004
• J.J. Cale and Eric Clapton, The Road to Escondido – 2006
• Avenged Sevenfold, Avenged Sevenfold – 2007
• Jon Larsen, Strange News From Mars – 2007
• Stu Nevitt, The Marion Kind – 2007